PECO definition source appears twice in the browser, but is not in the file

[cooperl09]

See: http://browser.planteome.org/amigo/term/EO:0007359#display-lineage-tab

http://dev.planteome.org/amigo/term/PECO:0007359#display-lineage-tab

Compare to stanza in file:
[Term]
id: PECO:0007359
name: plant experimental condition
alt_id: EO:0007359
def: "A plant treatment (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response." [GR:pj, PO:cooperl]

Not sure why this is occurring in this ontology only?

[cmungall]

Hmm, this shouldn't be happening, there is no eo.owl in https://github.com/Planteome/planteome-core/blob/master/planteome.owl

…

On 9 Jan 2018, at 11:44, Laurel Cooper wrote: See: http://browser.planteome.org/amigo/term/EO:0007359#display-lineage-tab http://dev.planteome.org/amigo/term/PECO:0007359#display-lineage-tab Compare to stanza in file: [Term] id: PECO:0007359 name: plant experimental condition alt_id: EO:0007359 def: "A plant treatment (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response." [GR:pj, PO:cooperl] Not sure why this is occurring in this ontology only? -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: #35

[cmungall]

oh I see one URL is prod and another dev, I assume the prod one hasn't been updated since the EO->PECO switch

…

On 9 Jan 2018, at 11:49, Chris Mungall wrote: Hmm, this shouldn't be happening, there is no eo.owl in https://github.com/Planteome/planteome-core/blob/master/planteome.owl On 9 Jan 2018, at 11:44, Laurel Cooper wrote: > See: > http://browser.planteome.org/amigo/term/EO:0007359#display-lineage-tab > > http://dev.planteome.org/amigo/term/PECO:0007359#display-lineage-tab > > Compare to stanza in file: > [Term] > id: PECO:0007359 > name: plant experimental condition > alt_id: EO:0007359 > def: "A plant treatment (PECO:0001001) and/or study type > (PECO:0007231) applied to a whole plant (PO:0000003), a plant > structure (PO:00090119), and/or a plant population as part of an > experiment to evaluate the plant response." [GR:pj, PO:cooperl] > > Not sure why this is occurring in this ontology only? > > -- > You are receiving this because you are subscribed to this thread. > Reply to this email directly or view it on GitHub: > #35

[elserj]

Correct, the actual issue is that the "source" references are there twice ( GR:pj, PO:cooperl, GR:pj, PO:cooperl). Happens on both dev and live, so the issue is not new, but wasn't noticed before and apparently only happens with peco terms, although I haven't verified this.