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@GMOD Generic Model Organism Database Project

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    126 repositories

    • JBrowseMSA

      Public
      A multiple sequence alignment viewer
      TypeScript
      •
      MIT License
      •4•26•23•1•Updated Sep 3, 2026Sep 3, 2026

    • Apollo3

      Public
      Monorepo for Apollo 3 server-side and client-side (JBrowse 2 plugin) components.
      genomicsgenome-annotation
      genomicsgenome-annotation
      TypeScript
      •
      Apache License 2.0
      •11•16•61•11•Updated Sep 3, 2026Sep 3, 2026

    • jbrowse-plugin-protein3d

      Public
      3D protein structure visualizer in jbrowse 2 - WIP
      TypeScript
      •0•1•6•0•Updated Sep 3, 2026Sep 3, 2026

    • jb2hubs

      Public
      Source code for the JBrowse 2 genome hubs webite and data processing scripts
      TypeScript
      •0•0•28•0•Updated Sep 3, 2026Sep 3, 2026

    • jbrowse-components

      Public
      Source code for JBrowse 2, a modern React-based genome browser
      visualizationbioinformaticsgenomics
      visualizationbioinformaticsgenomicsjbrowse
      TypeScript
      •
      Apache License 2.0
      •87•294•64•3•Updated Sep 3, 2026Sep 3, 2026

    • cram-js

      Public
      Read CRAM v3 and v2 in node or in the browser
      genomics
      genomics
      C
      •
      MIT License
      •9•18•1•0•Updated Sep 2, 2026Sep 2, 2026

    • gff-nostream

      Public
      TypeScript
      •
      MIT License
      •0•2•0•1•Updated Sep 2, 2026Sep 2, 2026

    • jbrowse-plugin-msaview

      Public
      multiple sequence alignment browser plugin for JBrowse 2
      TypeScript
      •
      Apache License 2.0
      •0•7•6•0•Updated Sep 2, 2026Sep 2, 2026

    • vcf-js

      Public
      VCF (variant call format) parser
      TypeScript
      •
      MIT License
      •4•26•2•2•Updated Sep 1, 2026Sep 1, 2026

    • bam-js

      Public
      Parse BAM and BAM index files in javascript for node and the browser
      TypeScript
      •
      MIT License
      •9•27•4•0•Updated Aug 31, 2026Aug 31, 2026

    • hic

      Public
      Read .hic contact matrix files in node or the browser
      TypeScript
      •
      Other
      •0•0•0•0•Updated Aug 29, 2026Aug 29, 2026

    • bbi-js

      Public
      Parser for bigwig and bigbed files
      TypeScript
      •
      MIT License
      •6•9•2•0•Updated Aug 29, 2026Aug 29, 2026

    • JBrowseR

      Public
      R interface to the JBrowse 2 Linear Genome View.
      visualizationrgenomics
      visualizationrgenomicsshinyreactjsrmarkdown
      R
      •
      Apache License 2.0
      •3•40•0•0•Updated Aug 27, 2026Aug 27, 2026

    • jbrowse-anywidget

      Public
      JBrowse 2 linear genome view as an anywidget for notebooks (GPU-rendered)
      JavaScript
      •
      Apache License 2.0
      •0•1•0•0•Updated Aug 27, 2026Aug 27, 2026

    • trix-js

      Public
      Read UCSC Trix indexes in pure JavaScript
      TypeScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Aug 27, 2026Aug 27, 2026

    • indexedfasta-js

      Public
      Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
      TypeScript
      •
      MIT License
      •3•12•0•0•Updated Aug 27, 2026Aug 27, 2026

    • twobit-js

      Public
      Read .2bit files with pure JS. Works in node or webpack.
      TypeScript
      •
      MIT License
      •1•4•0•1•Updated Aug 27, 2026Aug 27, 2026

    • tabix-js

      Public
      Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
      TypeScript
      •
      MIT License
      •4•14•0•0•Updated Aug 27, 2026Aug 27, 2026

    • jbrowse-plugin-list

      Public
      List of plugins for the JBrowse 2 plugin store.
      TypeScript
      •5•3•1•3•Updated Aug 26, 2026Aug 26, 2026

    • hclust

      Public
      Hierarchical clustering in javascript
      TypeScript
      •
      MIT License
      •0•2•0•0•Updated Aug 24, 2026Aug 24, 2026

    • range-cache-filehandle

      Public
      A filehandle that caches byte ranges in chunks and coalesces adjacent reads into one request
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Aug 23, 2026Aug 23, 2026

    • generic-filehandle2

      Public
      modernization of the original generic-filehandle, no Buffer polyfill needed
      TypeScript
      •0•0•0•0•Updated Aug 23, 2026Aug 23, 2026

    • mobx-state-tree

      Public
      JBrowse fork of mobx-state-tree, based on v5.4.2
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2026Aug 22, 2026

    • nclist-js

      Public
      Read JBrowse v1 nested containment list feature stores from modern JS
      TypeScript
      •
      MIT License
      •0•0•0•1•Updated Aug 21, 2026Aug 21, 2026

    • generic-filehandle

      Public
      use a subset of the NodeJS promise-based file handle API to access both local and remote files
      TypeScript
      •6•5•4•3•Updated Aug 21, 2026Aug 21, 2026

    • ucsc-hub-js

      Public
      read and write UCSC track and assembly hub files in node or the browser
      TypeScript
      •
      MIT License
      •1•5•5•1•Updated Aug 21, 2026Aug 21, 2026

    • bed-js

      Public
      A parser for the BED format including autoSql support
      TypeScript
      •
      MIT License
      •0•5•1•0•Updated Aug 21, 2026Aug 21, 2026

    • gff-js

      Public
      parse and format streams of GFF3, for node or webpack
      genomics
      genomics
      TypeScript
      •
      MIT License
      •5•10•0•1•Updated Aug 21, 2026Aug 21, 2026

    • shared-read-cache

      Public
      next gen of abortable-promise-cache
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Aug 21, 2026Aug 21, 2026

    • bgzf-filehandle

      Public
      Nodejs filehandle for reading bgzip+.gzi compressed files
      TypeScript
      •
      MIT License
      •4•8•1•1•Updated Aug 21, 2026Aug 21, 2026
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