snap-stanford repositories

94 repositories

Biomni
Public
Biomni: a general-purpose biomedical AI agent
agent ai biomedicine
agent ai biomedicine
Python
•
Apache License 2.0
•705•3.9k•57•43•Updated Sep 7, 2026Sep 7, 2026
uce-training-suite
Public
0•0•0•0•Updated Aug 27, 2026Aug 27, 2026
cellrater
Public
0•0•0•0•Updated Aug 27, 2026Aug 27, 2026
memorilla
Public
0•0•0•0•Updated Aug 11, 2026Aug 11, 2026
snap-skills
Public
Python
•3•4•0•0•Updated Jul 30, 2026Jul 30, 2026
UCE
Public
UCE is a zero-shot foundation model for single-cell gene expression data
Python
•
MIT License
•50•336•2•1•Updated Jul 8, 2026Jul 8, 2026
UCE-brain
Public
Jupyter Notebook
•1•3•0•0•Updated May 26, 2026May 26, 2026
ogb-web
Public
OGB website
SCSS
•
MIT License
•1•0•0•0•Updated May 12, 2026May 12, 2026
perturb-hd
Public
Jupyter Notebook
•0•2•0•0•Updated May 1, 2026May 1, 2026
PULSAR
Public
PULSAR: a Foundation Model for Multi-scale and Multicellular Biology
ai genetics single-cell
ai genetics single-cell virtual-cell foundation-models
Python
•
MIT License
•8•38•1•1•Updated Mar 1, 2026Mar 1, 2026
optimas
Public
(ICLR 2026) Optimas: Optimizing Compound AI Systems
optimization multiagent-systems reward-learning
optimization multiagent-systems reward-learning compound-ai-systems
Python
•
Apache License 2.0
•9•82•2•1•Updated Feb 6, 2026Feb 6, 2026
stark
Public
(NeurIPS D&B 2024) STaRK: Benchmarking LLM Retrieval on Textual and Relational Knowledge Bases
nlp information-retrieval graph
nlp information-retrieval graph knowledge-base semi-structured-data multimodal llm
Python
•
MIT License
•54•335•5•2•Updated Feb 6, 2026Feb 6, 2026
precice
Public
Python
•5•9•1•0•Updated Jan 26, 2026Jan 26, 2026
deepsnap
Public
Python library assists deep learning on graphs
deep-learning pytorch graph-neural-networks
deep-learning pytorch graph-neural-networks
Python
•
MIT License
•57•574•23•1•Updated Nov 24, 2025Nov 24, 2025
relgt
Public
Relational Graph Transformer
transformers relational-databases graph-neural-networks
transformers relational-databases graph-neural-networks relational-deep-learning graph-transformer
Python
•
MIT License
•20•82•3•0•Updated Jul 10, 2025Jul 10, 2025
BioDiscoveryAgent
Public
BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
Python
•
MIT License
•26•125•3•1•Updated Jul 6, 2025Jul 6, 2025
llm-social-network
Public
Jupyter Notebook
•13•36•0•0•Updated Jun 30, 2025Jun 30, 2025
RelGNN
Public
[ICML 2025] RelGNN: Composite Message Passing for Relational Deep Learning
Python
•
MIT License
•7•23•2•0•Updated Jun 12, 2025Jun 12, 2025
stage-gnn
Public
Python
•
MIT License
•0•5•0•0•Updated Jun 12, 2025Jun 12, 2025
POPPER
Public
Automated Hypothesis Testing with Agentic Sequential Falsifications
agent hypothesis-testing llm
agent hypothesis-testing llm ai-for-science
Python
•32•288•5•1•Updated May 14, 2025May 14, 2025
ogb
Public
Benchmark datasets, data loaders, and evaluators for graph machine learning
deep-learning datasets graph-machine-learning
deep-learning datasets graph-machine-learning graph-neural-networks
Python
•
MIT License
•406•2.1k•35•8•Updated May 6, 2025May 6, 2025
GreaseLM
Public
[ICLR 2022 spotlight]GreaseLM: Graph REASoning Enhanced Language Models for Question Answering
knowledge-graph question-answering language-model
knowledge-graph question-answering language-model commonsense-reasoning graph-neural-networks biomedical-ques
Python
•
MIT License
•42•243•14•0•Updated Apr 23, 2025Apr 23, 2025
planet
Public
PlaNet: Predicting population response to drugs via clinical knowledge graph
knowledge-graph language-model graph-neural-networks
knowledge-graph language-model graph-neural-networks biomedicine
Python
•
MIT License
•5•32•0•0•Updated Mar 13, 2025Mar 13, 2025
KGWAS
Public
KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
ai genetics knowledge-graph
ai genetics knowledge-graph functional-genomics
Python
•
MIT License
•10•78•5•2•Updated Mar 7, 2025Mar 7, 2025
supply-chains
Public
Python
•4•25•1•1•Updated Feb 25, 2025Feb 25, 2025
GEARS
Public
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
Python
•
MIT License
•90•404•17•4•Updated Feb 1, 2025Feb 1, 2025
ViRel
Public
ViRel: Unsupervised Visual Relations Discovery with Graph-level Analogy
machine-learning graph representation-learning
machine-learning graph representation-learning unsupervised-learning reasoning graph-neural-networks
Python
•4•11•2•1•Updated Aug 10, 2024Aug 10, 2024
relbench-user-study
Public
Python
•5•6•2•0•Updated Aug 7, 2024Aug 7, 2024
SATURN
Public
Jupyter Notebook
•
MIT License
•29•173•3•1•Updated Jul 3, 2024Jul 3, 2024
neural-subgraph-learning-GNN
Public
Jupyter Notebook
•74•367•21•3•Updated Jun 25, 2024Jun 25, 2024

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snap-stanford

All

94 repositories

Biomni

uce-training-suite

cellrater

memorilla

snap-skills

UCE

UCE-brain

ogb-web

perturb-hd

PULSAR

optimas

stark

precice

deepsnap

relgt

BioDiscoveryAgent

llm-social-network

RelGNN

stage-gnn

POPPER

ogb

GreaseLM

planet

KGWAS

supply-chains

GEARS

ViRel

relbench-user-study

SATURN

neural-subgraph-learning-GNN

Repositories list

94 repositories