sep25 self-feedback

[WandrilleD]

• slide deck1 : move the bit on other sequencing techs to annex
• trimmomatic practical: with EESSI command is simplified to trimmomatic. ALT: switch to fastp?
• toy dataset : make it bigger? MORE IMPORTANT: contamination contains PE adapter for single end data ...
• mention pipeline tools (https://nf-co.re/rnaseq/3.14.0/)

[WandrilleD]

from feedback:

• It could be nice to have a final document summarizing each step with the corresponding code to be able to come back it later
• somehow fluidify the bash parts

[WandrilleD]

https://www.w3schools.com/bash/bash_exercises.php