Repositories list

• ygc-blog

  Public
  Guangchuang Yu's Blog

  TypeScript

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 4, 2026Sep 4, 2026

• MicrobiomeProfiler

  Public
  :microbe: A shiny package for microbiome functional enrichment analysis

  R

  •88 forks•4242 stars•00 issues•00 pull requests•Updated Sep 1, 2026Sep 1, 2026

• sclet

  Public
  A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

  R

  •88 forks•2424 stars•33 issues•00 pull requests•Updated Aug 31, 2026Aug 31, 2026

• TCMDATA

  Public
  Traditional Chinese Medicine Data Analysis and Visualization

  R

  •33 forks•1717 stars•00 issues•00 pull requests•Updated Aug 31, 2026Aug 31, 2026

• mechgraph

  Public
  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 30, 2026Aug 30, 2026

• DOSE

  Public
  :mask: Disease Ontology Semantic and Enrichment analysis

  semantic-similaritydisease-ontologyenrichment-analysis

  semantic-similaritydisease-ontologyenrichment-analysis

  R

  •3434 forks•125125 stars•1818 issues•00 pull requests•Updated Aug 30, 2026Aug 30, 2026

• treedata-book-2ed

  Public
  :book: Data Integration, Manipulation and Visualization of Phylogenetic Trees

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 30, 2026Aug 30, 2026

• seqmagick

  Public
  sequence manipulation

  R

  •22 forks•66 stars•00 issues•00 pull requests•Updated Aug 29, 2026Aug 29, 2026

• seqcombo

  Public
  Visualization of Viral Genetic Reassortment

  R

  •77 forks•2121 stars•00 issues•00 pull requests•Updated Aug 29, 2026Aug 29, 2026

• yulab.utils

  Public
  Miscellaneous functions commonly used by 'YuLab-SMU'.

  R

  •1111 forks•3838 stars•00 issues•00 pull requests•Updated Aug 29, 2026Aug 29, 2026

• yulab-smu.github.io

  Public
  :house: Homepage for YuLab-SMU

  HTML

  •66 forks•1414 stars•00 issues•00 pull requests•Updated Aug 28, 2026Aug 28, 2026

• aisdk

  Public
  🤖 A production-grade framework for building AI-powered applications in R.

  R

  •

  Other

  •88 forks•7575 stars•77 issues•11 pull request•Updated Aug 26, 2026Aug 26, 2026

• wikiprofiler

  Public
  R

  •44 forks•66 stars•00 issues•00 pull requests•Updated Aug 25, 2026Aug 25, 2026

• games

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 25, 2026Aug 25, 2026

• aplot

  Public
  Decorate a plot with associated information

  R

  •1717 forks•131131 stars•55 issues•00 pull requests•Updated Aug 23, 2026Aug 23, 2026

• Rho_for_mac

  Public
  an agent-native desktop workbench for R

  Rust

  •

  GNU Affero General Public License v3.0

  •1010 forks•11 star•00 issues•00 pull requests•Updated Aug 21, 2026Aug 21, 2026

• Rho

  Public
  an agent-native desktop workbench for R

  Rust

  •

  GNU Affero General Public License v3.0

  •1010 forks•2929 stars•1515 issues•33 pull requests•Updated Aug 21, 2026Aug 21, 2026

• icare

  Public
  Intelligent ClinlAbomics Research Expedition

  R

  •22 forks•22 stars•00 issues•11 pull request•Updated Aug 21, 2026Aug 21, 2026

• SVP

  Public
  Spatially Variable Profiler

  R

  •

  GNU General Public License v3.0

  •00 forks•1212 stars•00 issues•00 pull requests•Updated Aug 18, 2026Aug 18, 2026

• clusterProfiler

  Public
  :bar_chart: A universal enrichment tool for interpreting omics data

  visualizationgorstats+ 3

  visualizationgorstatskeggenrichment-analysisgsea

  R

  •267267 forks•1.2k1.2k stars•358358 issues•00 pull requests•Updated Aug 14, 2026Aug 14, 2026

• enrichit

  Public
  C++ Implementations of Functional Enrichment Analysis

  R

  •33 forks•44 stars•00 issues•00 pull requests•Updated Aug 14, 2026Aug 14, 2026

• ggbreak

  Public
  :broken_heart: An implementation of scale functions for setting axis breaks of a 'gg' plot.

  ggplot2axis-breakwrap-plot+ 2

  ggplot2axis-breakwrap-plotcut-plotggbreak

  R

  •77 forks•148148 stars•3535 issues•00 pull requests•Updated Aug 7, 2026Aug 7, 2026

• gson

  Public
  Base Class and Methods for 'gson' Format

  R

  •44 forks•33 stars•00 issues•00 pull requests•Updated Aug 4, 2026Aug 4, 2026

• virolink

  Public
  Visualization of Viral Integration in Host Genomes

  R

  •11 fork•33 stars•00 issues•00 pull requests•Updated Aug 4, 2026Aug 4, 2026

• aplotExtra

  Public
  Creating composite plot using 'aplot'

  R

  •66 forks•1010 stars•00 issues•00 pull requests•Updated Aug 4, 2026Aug 4, 2026

• aisdk.providers

  Public
  Additional Model Provider Adapters for the 'aisdk' Toolkit

  R

  •

  Other

  •11 fork•22 stars•00 issues•11 pull request•Updated Aug 2, 2026Aug 2, 2026

• aisdk.evidence

  Public
  'capR' evidence packs, policy gates, and citations for the 'aisdk' toolkit

  R

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 16, 2026Jul 16, 2026

• aisdk.mcp

  Public
  Model Context Protocol (MCP) Client and Server for 'aisdk'

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 15, 2026Jul 15, 2026

• aisdk.console

  Public
  Interactive terminal chat console for the aisdk toolkit (console_chat REPL, slash commands, inspector, paste handling, terminal agent)

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 14, 2026Jul 14, 2026

• ReactomePA

  Public
  Reactome Pathway Analysis

  enrichment-analysisreactome-pathway-analysisreactomepa

  enrichment-analysisreactome-pathway-analysisreactomepa

  R

  •1010 forks•4646 stars•1818 issues•00 pull requests•Updated Jul 9, 2026Jul 9, 2026