Repositories list

• cfWGS-MM-MRD

  Public
  This directory contains scripts for "Cell-free DNA Whole Genome Sequencing for Non-Invasive MRD Detection in Multiple Myeloma" by Abelman et al., 2025

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 4, 2026Sep 4, 2026

• ctims

  Public
  CTIMS project

  CSS

  •

  Apache License 2.0

  •1010 forks•33 stars•88 issues•55 pull requests•Updated Aug 19, 2026Aug 19, 2026

• tigerdb

  Public
  TIGERdb: T-Cell and ImmunoGlobulin Epitope Receptor DataBase

  TypeScript

  •

  GNU Affero General Public License v3.0

  •00 forks•11 star•00 issues•33 pull requests•Updated Aug 19, 2026Aug 19, 2026

• mixcr_QC

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 11, 2026Aug 11, 2026

• ped_CapTCRseq

  Public
  Dynamics of peripheral T-cell repertoire in pediatric cancer patients over the course of chemoradiation

  ngstcr-repertoirepediatric-cancer+ 1

  ngstcr-repertoirepediatric-cancermixcr

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 6, 2026Aug 6, 2026

• EAC-ML-pipeline

  Public
  This directory contains scripts for "Tumor-agnostic multimodal blood cell-free DNA analysis enables detection, monitoring, and risk stratification in esophageal…

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 29, 2026Jul 29, 2026

• cfdna-myeloma-multiomics

  Public
  Analysis and manuscript code for a targeted panel and shallow WGS study of peripheral blood and bone marrow cell-free DNA in multiple myeloma. Includes pipeline…

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 24, 2026Jul 24, 2026

• oncographer

  Public
  OncoGrapher: standardized, graph-based, clinical data abstraction tool leveraging the MOHCCN data standard

  TypeScript

  •11 fork•55 stars•00 issues•00 pull requests•Updated Jul 7, 2026Jul 7, 2026

• MismatchResolveDX

  Public
  This pipeline is used for the analysis of the MismatchResolveDx (previously the MultiMMR) sequencing panel (including shallow WGS and targeted sequencing of con…

  Perl

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 27, 2026May 27, 2026

• neuroblastoma_spatial_tcr

  Public
  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 26, 2026May 26, 2026

• gcp-code

  Public
  Google Cloud Platform (GCP) script collection

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• scVkMYC_mPC

  Public
  R

  •00 forks•22 stars•11 issue•00 pull requests•Updated Apr 27, 2026Apr 27, 2026

• braf_melanoma_rap_wes

  Public
  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• pipeline-suite

  Public
  Collection of pipelines for NGS analysis along with utilities

  Perl

  •33 forks•44 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• matchminer-api

  Public
  A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials

  Python

  •1414 forks•00 stars•00 issues•11 pull request•Updated Feb 27, 2026Feb 27, 2026

• ctims-matchminer-engine

  Public
  Python

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• TRI_LRWGS_glioma

  Public
  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 12, 2026Jan 12, 2026

• EarlyDetectionHBOC

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• HEARTBEATOV_wgs

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 27, 2025Nov 27, 2025

• ctims-pages

  Public
  CTIMS Github Pages

  00 forks•00 stars•00 issues•00 pull requests•Updated Nov 19, 2025Nov 19, 2025

• INSPIRE_TCR

  Public
  Pan-cancer assessment of the tumour and systemic T-cell receptor repertoire dynamics in patients treated with pembrolizumab

  R

  •00 forks•22 stars•00 issues•00 pull requests•Updated Nov 5, 2025Nov 5, 2025

• CompareFragmentSize

  Public
  Compare fragment size of variant- and reference-allele containing reads in a BAM file

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 6, 2025Oct 6, 2025

• crescent

  Public
  The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

  dockerweb-servertoolkit+ 5

  dockerweb-servertoolkitcancerdatabasesportalsingle-cell-rna-seqsingle-cell-analysis

  R

  •

  GNU General Public License v3.0

  •44 forks•99 stars•11 issue•00 pull requests•Updated May 14, 2025May 14, 2025

• MEDIPIPE

  Public
  HTML

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  MIT License

  •55 forks•1212 stars•22 issues•00 pull requests•Updated May 13, 2025May 13, 2025

• SpondyloArthritis_TCR

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 5, 2025May 5, 2025

• wm-cfwgs-mrd

  Public
  This repository contains all R code and figure generation workflows used in Chow S., Abelman D. et al. (2025), Measurement of Bone Marrow Tumour Burden and Mini…

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 5, 2025May 5, 2025

• IRIS_TCR

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 21, 2025Mar 21, 2025

• IOKIN_TCR-and-ctDNA

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 16, 2025Mar 16, 2025

• COMBAT

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 14, 2025Feb 14, 2025

• MetaMutationalSigs

  Public
  https://hub.docker.com/r/pp535/metamutationalsigs

  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2025Feb 10, 2025