BWA-MEME: Faster BWA-MEM2 using learned-index
Accelerated short-read alignment, derived from bwa-mem2 — drop-in replacement with correctness fixes, performance improvements, single-binary methylation, and shared-memory index.
Rust FFI crate for bwa-mem3 with packed-BAM output and caller-owned parallelism
Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
Benchmarking suite comparing bwa-mem3 against upstream bwa-mem2 v2.2.1
Bioinformatics pipeline for WGS-based SNP genotyping and cultivar identification in Vitis vinifera
Disease-agnostic WES execution framework for FASTQ-to-annotated handoff generation.
Create reference genome index files for WGS data analysis
Germline short-variant calling Nextflow DSL2 pipeline: BWA-MEM2 + bcftools mpileup/call + MultiQC
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