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Jan 28, 2026 - C++
#
cd-hit
Here are 11 public repositories matching this topic...
CD HIT cluster file parser
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Apr 11, 2018 - Python
Community builds for the main bioinformatics software - Samtools, Tabix, Bcftools, CD-HIT
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Mar 17, 2026
Creating group files from Cd-Hit output clusters and automatic importing into CLANS savefile.
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Aug 28, 2020 - Python
RnD project Collaboration
genetic-algorithm partitioning-algorithms feature-extraction drug-discovery tf-idf feature-engineering clustering-algorithm sequence-models ensemble-machine-learning cd-hit interpretable-machine-learning word2vec-embeddinngs druggability autoencoder-neural-network nlp-deep-learning majority-voting encoding-algorithms shap-analysis
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May 25, 2025 - Jupyter Notebook
Representative sequence selection for large bioinformatics datasets
machine-learning bioinformatics clustering proteins evolution computational-biology phylogenetics mmseqs iq-tree hmmer hidden-markov-models virology mafft pfam phyloxml cd-hit vaccinology universal-vaccine disease-x
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Jul 29, 2026 - Python
Pipeline for discovering secreted multidomain fungal CAZymes using SignalP 6, DeepTMHMM, dbCAN, CD-HIT and homology-based candidate prioritization.
python bioinformatics jupyter-notebook bioinformatics-pipeline comparative-genomics fungi secretome bioinformatics-analysis hmmer genome-mining cd-hit signalp dbcan cazyme cazymes enzyme-discovery deeptmhmm
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Jun 25, 2026 - Roff
Development of a structure-driven HMM for the Kunitz domain (PF00014), combining curated 3D alignments and robust statistical evaluation. Project created during the MSc in Bioinformatics at the University of Bologna for the Laboratory of Bioinformatics 1 course.
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Aug 25, 2025 - Jupyter Notebook
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