chromatin-loops

Accurate and flexible loops calling tool for 3D genomic data.

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

Chromatin loop caller using Topological Data Analysis based on Hi-C data

Chromatin Landscape Exploration, Analysis, and Research Tools

A differentiable biomechanics based package to learn the left and right speed of cohesin at each genomic bin in .cool or .mcool chromatin looping

HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops

The repository contains the codes for the prediction of YY1 chromatin loops using densely connected neural network based on Kmer embeddings.

Quantify chromatin loop strength changes between two Hi-C conditions