cwl-workflow

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

CWL on Kubernetes

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Project Manager for NGS data analysis

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts

CReSCENT: CanceR Single Cell ExpressioN Toolkit | Portal: https://crescent.cloud | Docs: https://pughlab.github.io/crescent-frontend/

Gerber: Generalized Easy Reproducible Bioinformatics Environment wRapper

CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid mod…

CWL Worflow inputs/outputs to OGC API Processes inputs/outputs

This workflow performs annotation on SNV and INDEL VCFs.

Analysis workflow for novel gene search based on structural similarity search

Boostrap a Python CLI using click from a CWL CommandLineTool

Workflow for GA4GH/DREAM challenge (phase 2)

Work with Common Workflow Language (CWL). A monorepo shipping a workflow viewer/editor, CWL types, a CWL parser, and a full browser IDE with validation and execution backends.

A CWL implementation of a modular GATK Variant Calling pipeline

CWL Worflows processor to generate PlantUML diagrams