taxdump

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A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

bioinformatics cross-platform taxonomy taxid lca lineage taxdump taxonkit

🐞 Convert NCBI taxonomy dump into lineages

python taxonomy pandas ncbi-taxonomy ncbi lineage taxdump

A lightweight and high-performance bioinformatics package in Golang

golang package bioinformatics taxonomy sequence taxdump minimizer syncmer scaled-minhash

GTDB taxonomy taxdump files with trackable TaxIds

bioinformatics taxonomy taxid taxdump gtdb taxonkit

NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.

taxonomy ncbi-taxonomy taxid taxonomic-changes lineage taxdump txid

NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)

taxid taxdump ictv taxonkit

🌱 ➡️ 🌳 Add new taxa or taxonomic groups to the NCBI Taxdump files

taxonomy ncbi-taxonomy ncbi ncbi-database ncbi-blast taxdump ncbi-taxdump

Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files

python taxonomy python-library ancestry ncbi-taxonomy ncbi lineage taxdump taxids lineages

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