Summarization and expression/phenotype association analysis for CNV ranges
Bioinformatics publication: https://doi.org/10.1093/bioinformatics/btz632
Bioconductor package: https://bioconductor.org/packages/CNVRanger
CNV workshop: https://github.com/waldronlab/CNVWorkshop
The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.