ebi

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

The EMBL-EBI Visual Framework for websites and services.

quincunx: an R package to query, download and wrangle PGS Catalog data

Scripts from the "Scaling things up" talk I gave at the yearly EBI NGS Bioinformatics course between 2019 and 2024.

Entity-Boundary-Interactor Architecture in Python

R functions and workflow for submitting amplicon sequence data to the ENA.

Fetch ESPI&EBI news published by PAP at https://espiebi.pap.pl/

A Python library for interacting with EBI Search's API

Explore the EMPIAR cryo-EM archive from Python — stream any of ~3,000 datasets (8.9 PiB) over parallel HTTP range reads, nothing downloaded.

Search every structure in EMDB from Python — 60,895 cryo-EM maps by protein, organism, resolution, molecular weight and PDB cross-reference.

Fall 2020 BGGN-213 class website

An Angular 2 web application for the EBI Cloud Portal API

BBS Project developed by Ronald Pardo, Ana Sofia Villa and Gabriela Moreno for the course of EBI tools @ Universidad de los Andes 2024-02.

Easily install and load the hapiverse

ebi.ac.uk cli compound database parser

Angular-based input control for both conventional and Identifiers.org URIs

A SureChEMBL client to download all compound structures

A short script for searching in Uniprot using RESTful APIs

ELIXIR QC QCloud workflow