plant-science

tutorials made for biologists to learn deep learning

Materials of the course WBIO-A-08 Plant Bioinformatics

Python package for Genome-Wide Association Studies (GWAS). Implements GLM, MLM, FarmCPU, and BLINK with support for VCF, PLINK, HapMap, and CSV genotype formats.

CropForge is an open-source, code-first virtual farm runtime that enables agricultural researchers to define, execute, and visually analyse crop simulations entirely from Python code. It is distributed as a pip-installable package and runs completely on the researcher's local machine.

SPIRO is a Smart Plate Imaging Robot

Tools and Statistical Procedures in Plant Science

Packages for graphics and index for seed germination ecophysiological evaluation

An R package to investigate the RNA mobilome & population-scale changes.

Codex skill for Chinese scientific manuscript humanizing, terminology protection, and evidence-strength review.

collection of functional annotation methods in plant genomics

Complete tissue culture & hydroponics toolkit — beginner walkthrough, 10 SOPs, sterilization calculator, media formulations, growth regulators, EC/pH tools. Zero deps.

Beginner-first, peer-reviewed cannabis cultivation white papers — 33 self-contained interactive HTML guides on propagation, crop steering, environment, plant health, precision irrigation and GMP.

Plant science stomatal outreach game project

Condition-aware, evidence-traceable retrieval and abstention baseline for maize C4 photosynthesis

GPML to RDF for plant Wikipathways

Open-source resource on electroculture and electroagriculture based on Justin Christofleau's patents (1920s). Includes scientific studies, translated patents with modern diagrams, step-by-step guides, and educational materials for sustainable agriculture using atmospheric electricity.

Personal academic portfolio & research blog — Postdoctoral Scholar at UC Davis | Plant Science, Multi-Omics, Grapevine Virology

A Jupyter Docker Stack for Plant Scientists and Breeders

The Breeder Genomics Hub is a batteries-included JupyterHub distribution for breeders (Pangeo for plant scientists)

Interactive Streamlit application for exploring, comparing, and analyzing stochastic 3D root architecture simulations.